PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0083700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 315aa MW: 33308.5 Da PI: 8.3513

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0083700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.2	6.8e-23	49	95	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ ORGLA01G0083700.1 49 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 95 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	32	117	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-21	50	95	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MCAAPMASTA QPQQQPQQQQ EQQPVAAAAV PTPAPPASEA QPQKPTRVSL SYEEISKLFS 60 LPIAEAASIL GVCTSVLKRI CRSHGIVRWP YRKLVSGKSG DDTKNAEREK AKGLLEISKV 120 AKQKALSASG LSTVSPGAFQ GVAKSQQGSS KAGQVSPPGK QNVLGGSAIL SYGTQTKGIP 180 TYMDDFKYGF PSSGLSLQTM KWWGTDSHTE TTPAKDDNGE APESANEASK GMTDDELDWG 240 ADEAEAEADA DSAITTEPSA QLCSLRRKAV DDGRKLLTGK SCGGLELCRL NKRQKMALAQ 300 VFGASLPEQL RSKLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0083700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058984	0.0	AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	0.0	uncharacterized protein LOC4326758
TrEMBL	I1NLU7	0.0	I1NLU7_ORYGL; Uncharacterized protein
TrEMBL	Q0JP39	0.0	Q0JP39_ORYSJ; Os01g0246500 protein
STRING	OS01T0246500-01	0.0	(Oryza sativa)
STRING	ORGLA01G0083700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein