PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0101600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26233.1 Da    PI: 10.5256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0101600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151250442
                       -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         +s r  tf kRr g++KKA EL  LC++ v+v+++++
  ORGLA01G0101600.1 12 AKDSTRRLTFKKRRRGLIKKAGELASLCGIGVCVVVYGE 50
                       56788999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.339150IPR002100Transcription factor, MADS-box
CDDcd002661.03E-27285No hitNo description
PRINTSPR004046.2E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21395IPR002100Transcription factor, MADS-box
PfamPF003192.3E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARNRIILKK VAKDSTRRLT FKKRRRGLIK KAGELASLCG IGVCVVVYGE GEVKPEVWPS  60
APEARAILSR FNSAPNIDRF KRVTNQEQYL RKRIAKARER TSKADDGNRE RDATIMLYEA  120
ATGKCPVADL NVQELTNLGL VIDERINHLK ERIERLGGAA LMAPPPSTQP AEASSSLPPL  180
VPYANGAGME GNKRMKVSTH QKGWFINMST MTGDAGTSAD VEGNTGVGTS ARGDMMHLSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0101600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020700.0AP002070.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0511C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878329.11e-173agamous-like MADS-box protein AGL80
TrEMBLA0A0D3EMP71e-177A0A0D3EMP7_9ORYZ; Uncharacterized protein
TrEMBLI1NMC61e-177I1NMC6_ORYGL; Uncharacterized protein
STRINGORGLA01G0101600.11e-178(Oryza glaberrima)
STRINGOBART01G12040.11e-178(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-23M-type_MADS family protein