PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0110000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 547aa    MW: 57859.5 Da    PI: 6.8209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0110000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-21105225186
           trihelix   1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenln 58 
                        +Wt+ +v++Li+++ +++++    +                                  +kk++W++vs++m+e g  +sp+qC++k+++ln
  ORGLA01G0110000.1 105 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLN 196
                        69999999999998855555443222233444455555555556666666666666666********************************* PP

           trihelix  59 krykkikegekkr.tsessstcpyfdqle 86 
                        kryk++ +  +++ +++++++++++d ++
  ORGLA01G0110000.1 197 KRYKRVVDLLGRGkACKVVENHALLDAMD 225
                        ***********9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-17103251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY  60
SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSAGCP WTRMKWTDGM VRLLINVVYS  120
VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG  180
HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS  240
SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGVEATACF HHPPPASMAA ASSAARQAAA  300
AAPSLGMKDS SAGPEDDEDD SEDVPSSNEV DDDDDDDDDD DDEVGPGMKS RRIYGGHRVH  360
HHHHHHNGHH KRRRGDDVSS AGAGDDDDED GVKRARGAAS AAGGGDDEGP STVQQLQSEL  420
AAAVAGGGDP QQVRQWVRRR TVEVEEQQVA HEVRAYHLER QRLKWERFRA NKERDMERAR  480
LRNDRLRIDG RRMLLLLRQK DLDFDIAEAN SSSVDHLTSS APPPLAALQQ QQQPLGSSPS  540
TAAGHPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0110000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034140.0AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039210.0AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.10.0sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLI1NML00.0I1NML0_ORYGL; Uncharacterized protein
STRINGORGLA01G0110000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-43sequence-specific DNA binding transcription factors