PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0153900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 95aa    MW: 9940.3 Da    PI: 11.9803
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0153900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.3e-124282545
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                       ++ +rk++NR++A+rsR+RK+++++eL+  v++L a N aL
  ORGLA01G0153900.1 42 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGAL 82
                       6789**********************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-43895IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1854082IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.5E-104082No hitNo description
PfamPF001701.6E-94282IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.74E-84283No hitNo description
CDDcd147027.18E-134382No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASPGVVCTT VTPTSSAGSD QVVAGGGEAA RRPVAPAVME ERKRKRKESN RLSAQRSRAR  60
KQQQLDELAG QVAALRARNG ALGLAAREAA RRCAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146RKRKRK
24147RKRKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0153900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105261e-158AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence.
GenBankAP0042331e-158AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17.
GenBankAP0043611e-158AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24.
GenBankAP0149571e-158AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-158CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641337.11e-58ocs element-binding factor 1
TrEMBLA0A0D3EPW73e-57A0A0D3EPW7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YA693e-57A0A0D9YA69_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FMU53e-57A0A0E0FMU5_ORYNI; Uncharacterized protein
TrEMBLI1NNU96e-58I1NNU9_ORYGL; Uncharacterized protein
TrEMBLQ8RYP63e-57Q8RYP6_ORYSJ; Os01g0542700 protein
STRINGOGLUM01G22270.15e-58(Oryza glumipatula)
STRINGOS01T0542700-015e-58(Oryza sativa)
STRINGONIVA01G21240.15e-58(Oryza nivara)
STRINGORGLA01G0153900.11e-58(Oryza glaberrima)
STRINGOBART01G18790.15e-58(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137572428