PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0167300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 260aa    MW: 29104.3 Da    PI: 9.0254
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0167300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.95.3e-22291303101
             DUF260   3 aaCkvlrrkCakdCvlapyfpa......eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                        aa+++l+   a+d vla + pa      +++ ++ n+++lFG++n+ ++++a+ +e+++d+mss+ yeA+++ar+P++ a+gv+++l++++e
  ORGLA01G0167300.1  29 AAMRHLQG--AEDGVLAGV-PArvilhgDEKVRLLNAQRLFGTRNIRHFVQATLPEKQDDLMSSIKYEAQVWARNPQSCATGVMWHLERKVE 117
                        66777766..555555544.332333347789************************************************************ PP

             DUF260  89 qlkaelallkeel 101
                        ++ a+l++l+++l
  ORGLA01G0167300.1 118 RELAKLSKLRQKL 130
                        ********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.82423130IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-1747127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
STSATMVDNP SLAPKSSPLP PPPAAAVEAA MRHLQGAEDG VLAGVPARVI LHGDEKVRLL  60
NAQRLFGTRN IRHFVQATLP EKQDDLMSSI KYEAQVWARN PQSCATGVMW HLERKVEREL  120
AKLSKLRQKL EMCKNLAAKK SIPETKDVGV RQVTSKEQEQ ERQYQACPAR ISAWTPRLFV  180
HRSACEIPIS QTESRIACMQ FFGRAFMAFA GQIQEEAINH EAEDAHYDFF PLQAHLVLDS  240
PRNPHPLGRP PLTRSHNVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0167300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1NP830.0I1NP83_ORYGL; Uncharacterized protein
STRINGORGLA01G0167300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1987288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.17e-08LOB domain-containing protein 7