PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0180600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 844aa    MW: 88997.1 Da    PI: 3.9063
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0180600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.12.2e-11754778125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr+lL+Y+rGA +V+C++C+t+
  ORGLA01G0180600.1 754 CGSCRILLAYFRGAGYVHCTCCQTM 778
                        ***********************96 PP
2zf-LSD141.32.5e-13792816125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C tlL+YP+GAp+V+C+lC +V
  ORGLA01G0180600.1 792 CGHCATLLMYPFGAPAVKCSLCLFV 816
                        **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.8E-11751781IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-7754777IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-8790817IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-10792816IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEVMYGETDT SAVSVSPVLG SAETDAAEID VIAGMQEEAP GSMLAMEVTY REVDAATVSV  60
SPVLESVEPD AAKIDVVARM QEEAPGSKLA MEVMYGETGT AAVSVPLVLE SREEGSLQES  120
MQRPSSPTMN IEQESMQRPF SPTIGTETSS PEMAPAGSEN CKVSWLPLPP PTPLGESMPS  180
LPVAAAPKVL LVMPEEAVES VPSSEALDAE KPASITQAEP SSPNTPPPGF ENFKSSWLPL  240
PTTPPPVETT DVLPDVVVTK AVEAPIEEVS RPLPALEVTN MESDTVLSIL PTTVLPTEGT  300
EGLLQQPLLR PPSPVVQSEP CLQNEMAPPG FENFKSSSEP CSAEEIAPPG SDNFKSSSEP  360
CLPEEMAPPG FENFKSSSEP CSQEEMAPPG FENFKSSWPP LPTLPQTVPD AAAADALAAT  420
VEEAAGPPPA LELEAMDVDM DAIHPPPLPF DSGVESSQKP LPRAPSPIMQ EAPCSPDRAP  480
PGFETYKSSQ LLLPSPSLAQ TTNVRQDQSV TEPVSVIEEA PQLLHSVEVM GVHMDAVPPL  540
LPSSESGADG LSPQQFAQPP PAEKDTTTCL PDMVHSGCDN SEPSQLLSLP AVISPVQTPD  600
GLADVPAIDR VAVALEESPQ RPLVSGEMEA GTVPIRSSPL KNISEGSLPQ LESESHSPTS  660
QAADSLLDAS DSKSVAVASE EMSQLPLASQ ATTTDLVSTT AMQPQSEGIV DESLQPQHPP  720
SSTAHDSPCL QDSVPLVPPP PSPYLNKEVG QMVCGSCRIL LAYFRGAGYV HCTCCQTMNY  780
VLEAHEVGKV HCGHCATLLM YPFGAPAVKC SLCLFVTEIG ERNVRRRLSI EQPTRTNSSG  840
LAEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0180600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0653750.0AK065375.1 Oryza sativa Japonica Group cDNA clone:J013008L21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621461.10.0protein LOL5
TrEMBLI1NPL60.0I1NPL6_ORYGL; Uncharacterized protein
STRINGORGLA01G0180600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-29lsd one like 2