PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0210100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 580aa MW: 63110.6 Da PI: 10.9122

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0210100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.8	4.7e-33	370	427	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ ORGLA01G0210100.1 370 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 427 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-35	354	429	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	361	429	IPR003657	WRKY domain
PROSITE profile	PS50811	32.535	364	429	IPR003657	WRKY domain
SMART	SM00774	2.6E-39	369	428	IPR003657	WRKY domain
Pfam	PF03106	3.5E-26	370	427	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
WALPCTGGGR AIRFTWGASR ARARRRPGRL RCLPRWLRWC ATRLHTHEXC TVSEWKRHGA 60 PPASLTPAAA AALHMLFPLR LRCHARTRRD AMPRRPYHHR QHQRPSARDR TARDRWQQAS 120 RWRVPPPRRX GPHVPAMEAG AVGWSKGARG RTRVGRPQRL NVXPRERERV RACVRARAKN 180 HEHGQRRREA AVDPAMSGEY QFQDELAPLF ARPGGGAGEM QMLPSSWFAD YLQAGTPMQM 240 DYDLMCRALE LPVGEDVKRE VGVVDVVAAG GGGAPPLTPN TTSSMSTSSS EGVGGGGGGG 300 AGAGAGEEES PARCKKEEED ENKEEGKGEE DGHKNKKGSA AKGGKAGKGE KRARQPRFAF 360 MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC PVKKRVERSY QDPAVVITTY 420 EGKHTHPIPA TLRGSTHLLA AHAQARXXXX XXXXXXXXXX XXXXXXMAPP LPLGSGAAAQ 480 FGRSSGIDVL SSFLPRAAAA HHGMTTMGGA AATTTTSHGL NSAISGGGGV SSETTSAVTV 540 AASAQPSSPA ALQMQHFMAQ DLGLLQDMLL PSFIHGTNQP

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

WALPCTGGGR AIRFTWGASR ARARRRPGRL RCLPRWLRWC ATRLHTHEXC TVSEWKRHGA  60
PPASLTPAAA AALHMLFPLR LRCHARTRRD AMPRRPYHHR QHQRPSARDR TARDRWQQAS  120
RWRVPPPRRX GPHVPAMEAG AVGWSKGARG RTRVGRPQRL NVXPRERERV RACVRARAKN  180
HEHGQRRREA AVDPAMSGEY QFQDELAPLF ARPGGGAGEM QMLPSSWFAD YLQAGTPMQM  240
DYDLMCRALE LPVGEDVKRE VGVVDVVAAG GGGAPPLTPN TTSSMSTSSS EGVGGGGGGG  300
AGAGAGEEES PARCKKEEED ENKEEGKGEE DGHKNKKGSA AKGGKAGKGE KRARQPRFAF  360
MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC PVKKRVERSY QDPAVVITTY  420
EGKHTHPIPA TLRGSTHLLA AHAQARXXXX XXXXXXXXXX XXXXXXMAPP LPLGSGAAAQ  480
FGRSSGIDVL SSFLPRAAAA HHGMTTMGGA AATTTTSHGL NSAISGGGGV SSETTSAVTV  540
AASAQPSSPA ALQMQHFMAQ DLGLLQDMLL PSFIHGTNQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-27	360	430	8	78	Probable WRKY transcription factor 4
2lex_A	5e-27	360	430	8	78	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0210100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341855	0.0	AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBank	AY870604	0.0	AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640235.1	0.0	uncharacterized protein LOC4326856 isoform X1
TrEMBL	I1NQG1	0.0	I1NQG1_ORYGL; Uncharacterized protein
STRING	ORGLA01G0210100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-47	WRKY DNA-binding protein 71