PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0214300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 332aa    MW: 36018.5 Da    PI: 10.1778
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0214300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1318104186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s++ ++++l
  ORGLA01G0214300.1  18 CWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVnarpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDL 103
                        7*******************************************999999********************9998775......458888887 PP

           trihelix  86 e 86 
                        +
  ORGLA01G0214300.1 104 D 104
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2516105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAAAGGG  120
GSAKKPSPPR GLPMMRRRLE SPSRSPSPPS PTPAVALPLP NYRQASNLPS AGLLFNKMAA  180
AAAAESDSED GYNNPNNNYE DDEDDGSQQS ASRSVSSRSG GVAAAGAGGG GVSSSKRKRG  240
GGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ  300
LAKAKHRKHP DGATEMLMSL AALPFLSTPA YL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0214300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0993960.0AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614545.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG86e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0FQX40.0A0A0E0FQX4_ORYNI; Uncharacterized protein
TrEMBLA2WTP40.0A2WTP4_ORYSI; Uncharacterized protein
TrEMBLI1NQK30.0I1NQK3_ORYGL; Uncharacterized protein
STRINGONIVA01G29560.10.0(Oryza nivara)
STRINGORGLA01G0214300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-27sequence-specific DNA binding transcription factors