PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0304300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 217aa    MW: 22752 Da    PI: 9.6729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0304300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  ORGLA01G0304300.1 59 FECKTCNRQFPTFQALGGHRASH 81
                       89**********99999998887 PP
2zf-C2H210.70.0017122144123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp Cg  F+    L  H+r+H
  ORGLA01G0304300.1 122 HECPVCGLEFPIGQALGGHMRRH 144
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-85781No hitNo description
PfamPF139121.1E-125883IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1185986IPR007087Zinc finger, C2H2
SMARTSM003550.185981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-8117144No hitNo description
PfamPF139124.2E-11121146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806122149IPR007087Zinc finger, C2H2
SMARTSM003550.14122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSKRSRSMWD MQEFVGSVDT ARVLMLLAQQ SQHGLLGGGG FAAGAQPVVV RGGAHDRVFE  60
CKTCNRQFPT FQALGGHRAS HKRPRQQQQH ALGAGAGADD AGLCLGRQPT PPRPQPAKPR  120
VHECPVCGLE FPIGQALGGH MRRHRAEAEA AATTTTTTTK NGDVGKAAAV KACDGGGVCL  180
DLNLTPSENR AKCRNVVGLG AGGQGVHKAL AMLDCFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0304300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032310.0AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633806.11e-156zinc finger protein ZAT12
TrEMBLI1NT531e-156I1NT53_ORYGL; Uncharacterized protein
STRINGORGLA01G0304300.11e-156(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-24C2H2 family protein