PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0307300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 188aa    MW: 19907.8 Da    PI: 6.7721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0307300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.22.9e-172392158
                       -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                        rsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  ORGLA01G0307300.1  2 CRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 39
                       69***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.696142IPR003657WRKY domain
SMARTSM007747.1E-8141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-15240IPR003657WRKY domain
PfamPF031062.6E-12239IPR003657WRKY domain
SuperFamilySSF1182905.1E-13341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
KCRSYYKCTS SRCSAKKHVE KSTDDPEMLI VTYEGSHHHG PQPLFPPHIA QPPPPTSVVG  60
FSAASGAGPP PSSPAAAARK RKNYVRAAFS PTTSEDDGDG AGRLRPEWPQ DDGTSCDVAE  120
LRRRGDAEHA APRRVATDRS CDDGGGGGST SASSSVARAD AATALSSDSP PTIWSCLDWP  180
WSQETLFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0307300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-130WRKY transcription factor WRKY28
TrEMBLI1NT831e-133I1NT83_ORYGL; Uncharacterized protein
STRINGORGLA01G0307300.11e-134(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.27e-13WRKY family protein