PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0324200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 261aa    MW: 27156.6 Da    PI: 7.3146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0324200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-203786255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  ORGLA01G0324200.1 37 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 86
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-223795IPR016177DNA-binding domain
SMARTSM003805.3E-3637100IPR001471AP2/ERF domain
PROSITE profilePS5103225.6863794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-333795IPR001471AP2/ERF domain
PfamPF008477.0E-143786IPR001471AP2/ERF domain
PRINTSPR003676.9E-123849IPR001471AP2/ERF domain
CDDcd000182.11E-154596No hitNo description
PRINTSPR003676.9E-126076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
SEQSSDTQSA SAATMDEHHS PVGGGGNAEG PDTPRRRYRG VRQRPWGKWA AEIRDPHKAA  60
RVWLGTFETA EAAARAYDEA ALRFRGSRAK LNFPEDARLY PAAATTTTAA PPPAPVAAAS  120
PSAAIYPGAS QSAEYLRYQM LLQGRLTTAT PNQGTLLPFY GGGGGGGSMT NPYGGGGGGA  180
MSGFLGSYYS FPTPSVSVAT VPSSTSSAPG NYYSSHGGSH QSMSAAEEWN WENALVYPAT  240
AASWSESSYH HQPPAAAAHA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-243894663ATERF1
3gcc_A5e-243894663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0324200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032860.0AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.11e-180ethylene-responsive transcription factor ABR1
TrEMBLI1NTQ20.0I1NTQ2_ORYGL; Uncharacterized protein
STRINGORGLA01G0324200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-20ethylene response factor 110