PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0336300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 189aa    MW: 21726.8 Da    PI: 7.9701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0336300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-121550140
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40
                       ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e
  ORGLA01G0336300.1 15 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPE 50
                       78*****777.**********943...5**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-51550IPR001471AP2/ERF domain
PROSITE profilePS5103214.461650IPR001471AP2/ERF domain
SMARTSM003802.8E-51658IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-151650IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-101650IPR016177DNA-binding domain
PRINTSPR003671.1E-61728IPR001471AP2/ERF domain
PRINTSPR003671.1E-63955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSRAECGGGE EEERCRYRGV RRRRWGKWVS EIRVPGTRER LWLGSYATPE XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXT AYARPDHCAG ATAARHDELA RRGMYGAHAH AAGANARTSG ERQLVCAEEI  180
SVDDMEILM
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0336300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2291992e-95AF229199.1 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence.
GenBankAP0033462e-95AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBankAP0033792e-95AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07.
GenBankAP0149572e-95AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-95CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.14e-09ERF family protein