PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA01G0366500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 117aa MW: 12645.5 Da PI: 8.9023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA01G0366500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.8	4.7e-35	6	83	1	78
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +Ca+Ck+lrr+C+kdC++a fpa++p+kfa+vhk+FGasnv+k+l++lp +++ da+sslvyeA+ r+rdPvyG+vg ORGLA01G0366500.1 6 PCASCKLLRRRCTKDCIFASFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQQGDAVSSLVYEANDRMRDPVYGCVG 83 7***************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.129	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-35	6	83	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MGSGSPCASC KLLRRRCTKD CIFASFFPAD DPHKFAIVHK VFGASNVSKM LQELPAQQQG 60 DAVSSLVYEA NDRMRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA SRCSTAM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-37	2	83	7	88	LOB family transfactor Ramosa2.1
5ly0_B	6e-37	2	83	7	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA01G0366500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	3e-87	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638859.1	1e-52	LOB domain-containing protein 12
Refseq	XP_015692557.1	6e-53	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	8e-45	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0E0CCL7	3e-76	A0A0E0CCL7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CCL8	1e-76	A0A0E0CCL8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CCL9	7e-77	A0A0E0CCL9_9ORYZ; Uncharacterized protein
TrEMBL	I1NUX5	1e-79	I1NUX5_ORYGL; Uncharacterized protein
STRING	ORGLA01G0366500.1	2e-80	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-47	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]