PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0368600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 176aa    MW: 18585.5 Da    PI: 8.4951
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0368600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.52.5e-4535126394
              NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                         qd++lPianv+rimk  lP +akisk aket+qec++efisfvt+eas++c+re+rkt+ngdd+++a+ +lG+++y+++++ yl++yre e
  ORGLA01G0368600.1  35 GQDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVNGDDICHAMRSLGLDHYADAMHRYLQRYREGE 126
                        69***************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-4232131IPR009072Histone-fold
SuperFamilySSF471131.71E-3336137IPR009072Histone-fold
PfamPF008081.5E-2440103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-146785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-1486104No hitNo description
PRINTSPR006152.2E-14105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQGLPRASSS STSASRDRDG GDGDGGGGGV TMTNGQDNLL PIANVGRIMK DGLPPQAKIS  60
KRAKETIQEC ATEFISFVTG EASERCRRER RKTVNGDDIC HAMRSLGLDH YADAMHRYLQ  120
RYREGEELAA SLNSSSSAAA TAAAAAGSRG GGAIQIDVRA ELSIFRSGNN QGRPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-3936124492Transcription factor HapC (Eurofung)
4g92_B3e-3936124492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0368600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878241.12e-85nuclear transcription factor Y subunit B-4
SwissprotO040275e-43NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0D3EYD31e-125A0A0D3EYD3_9ORYZ; Uncharacterized protein
TrEMBLI1NUZ61e-125I1NUZ6_ORYGL; Uncharacterized protein
STRINGORGLA01G0368600.11e-125(Oryza glaberrima)
STRINGOBART01G43120.11e-125(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-44nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]