PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0376000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 199aa    MW: 22108.1 Da    PI: 9.5534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0376000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.7e-19171454128
                NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWk..atgkdke 91 
                        G+ F+Pt++el+ ++L+++++g   +++ ++ e+d + + Pw+L ++ +++++e +fFs r++++++ +r+        g W   +t + ++
  ORGLA01G0376000.1  17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFSARARRKPSVRRTVAggGGGGGAWMhsSTKNGQS 107
                        999*********************9**999**************744.4566788********999766665532244899*8435566678 PP

                NAM  92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        v++ +  + +++    fy +g+  + ++t W+m ey++
  ORGLA01G0376000.1 108 VTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 145
                        888788999*********888999999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-315171IPR003441NAC domain
PROSITE profilePS5100526.36614171IPR003441NAC domain
PfamPF023652.1E-1217145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL  60
LARHGRREEG FFFSARARRK PSVRRTVAGG GGGGGAWMHS STKNGQSVTD LGVVVRWCRI  120
NYCFYVRGEM GQQRSTGWMM AEYEITDPRC YRRADDGEED DFWVLCHVRK SSRPSAAKIS  180
PAKPARRRKP TAAADVRAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0376000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710600.0AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence.
GenBankAP0036870.0AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12.
GenBankAP0040730.0AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-122NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-122NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0D3EYL61e-144A0A0D3EYL6_9ORYZ; Uncharacterized protein
TrEMBLI1NV701e-144I1NV70_ORYGL; Uncharacterized protein
STRINGORGLA01G0376000.11e-144(Oryza glaberrima)
STRINGOBART01G43720.11e-144(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-11NAC domain containing protein 47