PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0376700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 443aa    MW: 48094.9 Da    PI: 6.5718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0376700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.75.6e-125504381374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91 
                        l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l
  ORGLA01G0376700.1  50 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRASP--TPAEVAAARRHFLDLCPFL 139
                        689************************************************************94444444..6899999************ PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        +++  +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v+
  ORGLA01G0376700.1 140 RLAGAAANQSILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VV 226
                        **********************************************************....9**************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                        +rl++l++e+Lrvk+gEala++++lqlh ll                     +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + 
  ORGLA01G0376700.1 227 SRLDALDVESLRVKTGEALAICSSLQLHCLLasdddaaaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVAEQEASHNAAGLT 318
                        ***********************************************9997522233344789***************************** PP

               GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                        erf+eal+yy+alfd+le++++r s er+ vEr llg+ei+n+vac g errerhe+le+W +rle aGF+ vpls++a  qa+++ +  + 
  ORGLA01G0376700.1 319 ERFVEALNYYAALFDCLEVGAARGSVERARVERWLLGEEIKNIVACDGGERRERHERLERWARRLEGAGFGRVPLSYYALLQARRVAQGLGC 410
                        ******************************************************************************************** PP

               GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                        dg++v ee+g ++l+W+dr+L+svSaWr
  ORGLA01G0376700.1 411 DGFKVREEKGNFFLCWQDRALFSVSAWR 438
                        ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.59324418IPR005202Transcription factor GRAS
PfamPF035142.0E-12250438IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHNFS NMPLHPAAAA SPTPPWMVRE LRSDERGLCL IHLLLNCAAA  60
AAAGRLDAAN AALEHIASLA APDGDAMQRV AAAFAEALAR RALRAWPGLC RALLLPRASP  120
TPAEVAAARR HFLDLCPFLR LAGAAANQSI LEAMESEKIV HVIDLGGADA TQWLELLHLL  180
AARPEGPPHL RLTSVHEHKE LLTQTAMALT KEAERLDVPF QFNPVVSRLD ALDVESLRVK  240
TGEALAICSS LQLHCLLASD DDAAAAVAGG DKERRSPESG LSPSTSRADA FLGALWGLSP  300
KVMVVAEQEA SHNAAGLTER FVEALNYYAA LFDCLEVGAA RGSVERARVE RWLLGEEIKN  360
IVACDGGERR ERHERLERWA RRLEGAGFGR VPLSYYALLQ ARRVAQGLGC DGFKVREEKG  420
NFFLCWQDRA LFSVSAWRGR RFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-65344402380Protein SCARECROW
5b3h_D6e-65344402380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA01G0376700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-171SCL3_ARATH; Scarecrow-like protein 3
TrEMBLI1NV770.0I1NV77_ORYGL; Uncharacterized protein
STRINGORGLA01G0376700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-125scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]