PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0041200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 228aa    MW: 25197.6 Da    PI: 10.289
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0041200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly182.86.4e-57521892139
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+
  ORGLA02G0041200.1  52 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKS 143
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        l+v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  ORGLA02G0041200.1 144 LSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 189
                        *******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.2E-7339208IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.88E-7543228IPR009044ssDNA-binding transcriptional regulator
PfamPF085368.6E-5852186IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQRLSRFVPS SSRRVTDLKD ALWSGSLTFQ HALSTFAADE NTSGRKFASY TVFKGKAALS  60
MQPILPSFSK LESGGSRVNK NGSVMLTFFP AVGQRKYDYS KKQLFALSPT EVGSLISLGP  120
AESCEFFHDP SMKSSHEGQV KKSLSVTPLG NDSGYFLNIT VLNNLQKTTE RLSLPISKAE  180
FTVMRTALSF ALPHILGWDQ ALTNHQPSPS PASKPRVERP HPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A9e-73432058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B9e-73432058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C9e-73432058169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D9e-73432058169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0041200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-168single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-75WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLB8AI561e-167B8AI56_ORYSI; Uncharacterized protein
TrEMBLI1NXF61e-167I1NXF6_ORYGL; Uncharacterized protein
TrEMBLQ6ET431e-167Q6ET43_ORYSJ; Os02g0158400 protein
STRINGOS02T0158400-011e-167(Oryza sativa)
STRINGORGLA02G0041200.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-74WHIRLY 2