PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0051600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 428aa    MW: 45701.5 Da    PI: 4.1699
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0051600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix292.9e-0974152171
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71 
                        +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++        r rg  r + +C+ +we l+ +y  ++++e ++
  ORGLA02G0051600.1  74 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 152
                        5*******************************************9999999**********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92275139IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA AAARLRRGAE  60
PPSPRRTRSG GAPEWTPAET LALVAEVAAV DDGWSRSVSA FQKWAIVAEN LAASRGRAAR  120
GRGRGRAASE CRRRWEALAA EYGVVRRWEV RGAGGYWRMS AAARRKAGLP ADFDAEVYGA  180
MEALTLVEEA LLADATAGAG GAEIGEKSAA AAEVGEGDEV EAGEEDGNGD RGEVGEEDEG  240
EVGEDGEEED GNEMLEVEDD GNADDEDAQP DAMQGQHMSS SLNIISAYWY LSKDEVCETG  300
ANNEGKKSQT DACELANKLQ ENAQHIHMLL KEEAGENENH NLAISSDSME TTRQKGDELI  360
KSLGGLVSYL NQFTDLIKEN GFENVVGLWQ TLLPALASPF LSAIVYFSVW QSAVLGRFSA  420
LYSRIPWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116126RAARGRGRGRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0051600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057720.0AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626063.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLI1NXR00.0I1NXR0_ORYGL; Uncharacterized protein
STRINGORGLA02G0051600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.13e-11sequence-specific DNA binding transcription factors