PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0053800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 459aa    MW: 48239.7 Da    PI: 6.7658
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0053800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.6e-40196272177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  ORGLA02G0053800.1 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 272
                        6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33190258IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.111194271IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-38195273IPR004333Transcription factor, SBP-box
PfamPF031103.1E-30197270IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAVPAAAVAA DVVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA  60
AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF  120
VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV  180
LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ  240
CSRFHVLAEF DEAKRSCRKR LTEHNRRRRK PTAGGQSSKD SPPPPPSKKG TDASIASSYT  300
SCDHHKAAAS TTTASGVSCL QELADHHDVG GGHQAAMAAP PPPTLSLAAL PPQEEDDEDE  360
DGGLGTVLMM QQHHQRRRLQ HDGDGDDDVA AAAAHHHLMR SLARQQQQHR HSSGCSNNND  420
GDDDDHNNNN NNILSCSSAS DQQNSSNNNN MHFFEVDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281972701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253270KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0053800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048380.0AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878835.10.0squamosa promoter-binding-like protein 5 isoform X1
SwissprotQ0E3F80.0SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLI1NXT20.0I1NXT2_ORYGL; Uncharacterized protein
STRINGORGLA02G0053800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-33squamosa promoter binding protein-like 8