PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0064700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 209aa    MW: 23575.6 Da    PI: 7.741
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0064700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.2e-12112159552
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                        ++ rr+ +NRe+ArrsR RK+ +++eL   v eL   N++L  el+++
  ORGLA02G0064700.1 112 RKKRRLVSNRESARRSRVRKQRRLDELSSQVSELRDTNQRLLVELNHM 159
                        78899************************************9887764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.5E-10105159No hitNo description
SMARTSM003383.9E-9108172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.139110173IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-10112163No hitNo description
PfamPF001702.8E-9112158IPR004827Basic-leucine zipper domain
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQRQTCLQHK APNSLKLKST ASFLLHIANL PKSPSLSNMQ HDAISNIAYH PSMDFTSFFL  60
PQTDPYSHDL SALLDMAVVD PYISCNGSSI TMIPVTEDEA NAQPMNHGND ERKKRRLVSN  120
RESARRSRVR KQRRLDELSS QVSELRDTNQ RLLVELNHMI SKHARIVREN SQLREEASDL  180
QRKLSEMEME DAEVAAAAAA AAPRTLEVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRSRVRK
2124131RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0064700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353620.0CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBankCT8353650.0CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624742.11e-104basic leucine zipper 43
TrEMBLI1NY411e-151I1NY41_ORYGL; Uncharacterized protein
STRINGORGLA02G0064700.11e-152(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.11e-12basic leucine-zipper 42