PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0069900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 111aa    MW: 12145.6 Da    PI: 8.7701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0069900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-1610791886
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                       +p +f e+hg+  +e  +++l+   grsW+v+l++    r +++r vl+ GW +F+ +ngL +gD++ F+  +
  ORGLA02G0069900.1 10 VPVEFQEAHGYAARE--KVVLR-MLGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 79
                       7999*****998666..45544.479*******998887777788************************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.6331105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-238105IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-141079IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-151079IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-131076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAAAAAEQNV PVEFQEAHGY AAREKVVLRM LGRSWTVRLK HTKGRRPRRE RAVLRYGWHR  60
FCADNGLAVG DTCFFRALRS AGSGAGDVDD GDGDHVLSVT VHKADGGDPL E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550RPRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0069900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878688.11e-70B3 domain-containing protein LOC_Os02g10420, partial
SwissprotA3A4632e-60Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420
TrEMBLA0A0D9YNS21e-72A0A0D9YNS2_9ORYZ; Uncharacterized protein
TrEMBLI1NY934e-75I1NY93_ORYGL; Uncharacterized protein
STRINGOGLUM02G07480.12e-73(Oryza glumipatula)
STRINGORGLA02G0069900.16e-76(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.17e-07B3 family protein