PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0074000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 359aa    MW: 38187.7 Da    PI: 10.6464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0074000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.7e-14170231162
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  ORGLA02G0074000.1 170 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 231
                        5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-15170234IPR004827Basic-leucine zipper domain
PfamPF001702.0E-13171232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.461172235IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-16174234No hitNo description
SuperFamilySSF579596.88E-13174232No hitNo description
CDDcd147041.41E-21175226No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:2.60.120.2004.4E-15270344IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498991.53E-15270347IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001394.3E-16270342IPR001220Legume lectin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MATTRASLTD PLFPSPAARA PVKAKKLSWS MLHAGSKDER RGQSGEAEAE ASGGVHANPS  60
SPARMQEQAT SSRPSSSERS SSSGGHHMEI KEGKEAPLRS LPLPFPFLIS ILFAPLSGME  120
SDEEIGRVPE LGLEPGGAST SGRAAGGGTE RAQSSTAQAS ARRRGRSPAD KEHKRLKRLL  180
RNRVSAQQAR ERKKAYLNDL EVKVKDLEKK NSELEERFST LQNENQMLRQ ILKNTTVSRR  240
GPVLPKIPKS GLREAAPAGC GGLREAEGDE QFVLNGFTAA NLSFDGMATV TPNGLLMLTN  300
GTNXLKGHAF FPAPLQFHRT PNSTAMQSFS TAFVIGIISA FEDQGSGSPA AAGGSGRAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0074000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040450.0AP004045.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1135_F06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623711.12e-99transcription factor HY5
TrEMBLI1NYD40.0I1NYD4_ORYGL; Uncharacterized protein
STRINGORGLA02G0074000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.18e-36bZIP family protein