PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0080400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 253aa    MW: 28402.9 Da    PI: 5.0944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0080400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.21.9e-37121441128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +ppGfrF+Ptde+lvv+yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+ ++++     +++r+t sg+Wk tg++k+
  ORGLA02G0080400.1  12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREV----QTRRTTPSGFWKPTGTKKT 98 
                        79*************************988.55***************778888999*******99976....6899*************** PP

                NAM  92 vlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        +++    ++  + +k+ +vfy      +g++++ +kt+W+mheyrl
  ORGLA02G0080400.1  99 IFVVageHEVPTAVKRRFVFYlghhqpSGSNNNNNKTSWIMHEYRL 144
                        *99865555569*********98888778999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-434178IPR003441NAC domain
PROSITE profilePS5100541.3112178IPR003441NAC domain
PfamPF023652.1E-2213144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTMAAREVQ TRRTTPSGFW KPTGTKKTIF VVAGEHEVPT AVKRRFVFYL  120
GHHQPSGSNN NNNKTSWIMH EYRLMNSPRA AVPLSSSVNR LPTDDLTEEM VLCRISNKDL  180
PKPPFIHNGL LQFSSVGLNG DGYNYLILDH LEPPAMEYPN VGIGNVDDAA AGTDDPGDLD  240
EEIDDSMQRN HGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-271217817165NO APICAL MERISTEM PROTEIN
1ut4_B1e-271217817165NO APICAL MERISTEM PROTEIN
1ut7_A1e-271217817165NO APICAL MERISTEM PROTEIN
1ut7_B1e-271217817165NO APICAL MERISTEM PROTEIN
3swm_A1e-271217820168NAC domain-containing protein 19
3swm_B1e-271217820168NAC domain-containing protein 19
3swm_C1e-271217820168NAC domain-containing protein 19
3swm_D1e-271217820168NAC domain-containing protein 19
3swp_A1e-271217820168NAC domain-containing protein 19
3swp_B1e-271217820168NAC domain-containing protein 19
3swp_C1e-271217820168NAC domain-containing protein 19
3swp_D1e-271217820168NAC domain-containing protein 19
4dul_A1e-271217817165NAC domain-containing protein 19
4dul_B1e-271217817165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0080400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0NAC domain-containing protein 48-like
TrEMBLI1NYJ80.0I1NYJ8_ORYGL; Uncharacterized protein
STRINGORGLA02G0080400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.18e-36NAC family protein