PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0111800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 946aa MW: 109756 Da PI: 8.2658

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0111800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.6	1.7e-17	23	105	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A ++GF ++ +++++ +k t C k g+++ + + +++r+++ +rt+C+ak++vk++ +g+we + +++eHnH+l+p ORGLA02G0111800.1 23 RFYETHALKTGFVAKRGTNYRR------KKFTIECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLN-KGQWEYAAVRNEHNHPLCP 105 5*****************99......46789******9999.9******************.9**************97 PP
2	FAR1	57.1	5.9e-18	290	375	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY ++A +GF ++ +++k+ +k ++ C+k+gk + +k++ k+rr++ +++t+Cka++ vk++ +g+we t +++eHnH+l+ ORGLA02G0111800.1 290 RFYYAHALLTGFVGKRGTNYKR------KKFHLECNKSGKMKLTKSSenPMKKRRSNLVEKTQCKARVIVKLD-KGEWEFTAVRHEHNHPLC 374 59****************99......4678****998887755789999**************.9**************9 PP FAR1 91 p 91 p ORGLA02G0111800.1 375 P 375 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-15	23	105	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-16	290	375	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	496	588	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.803	778	814	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0078	789	816	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MELDNARPPE LGMKFATLED AQRFYETHAL KTGFVAKRGT NYRRKKFTIE CHKTGTSKLT 60 PNPQRKRKKN IIERTQCQAK VVVKLNKGQW EYAAVRNEHN HPLCPSYSLR FSKRKRRRNP 120 PSQKQLDVQR NSDQLTQADN LEERLSQPLI SADSNEVNNK RMPRHAEISI STVEKEPVDK 180 LQRAGDYQEQ SSNGIDKNTE RPIVDKLGDQ TSSIDHSLQH TEEHNRSHDN VESSEAPSED 240 TSSESNSDSS SGDESDKELG KYFYPSFDEL KNSRPPEPGM KFPSLQAAQR FYYAHALLTG 300 FVGKRGTNYK RKKFHLECNK SGKMKLTKSS ENPMKKRRSN LVEKTQCKAR VIVKLDKGEW 360 EFTAVRHEHN HPLCPSPLLA RFIIDHKQMS TGEKSFLRVL QQNRVPPKKI MKIFRKLRVC 420 FGDIPFENKD EHNIAQTEHR KANSDVESAL KHFTELQIQN PEFLYVMQKD EDNTVTSIFW 480 TDARLRIEYD IFGDLIMFDA AYSTDMYNMP FVPIIGINSH ATPFLLGCAL LKDEKVETFE 540 WMLRTFLQVM GGKMPRAVIT NQDTSMEKAF AELMPHVRLR FCKRHVMSKA QEKLGDFMTA 600 RGNINTDLHN LVGNSLVETE FEEGWVELIE RYNASENQHL QLMWQTRKSW APVYFREDLY 660 PFIDSVGSNE GINSLFKGNM LPKDTIDKFI GQFKEIQENI AKVHEEDRFQ SGADLKYISM 720 QPIEQHAAHI YTREIFLKVQ KELLHSTAFN VQEIQIGTVY RLEKVFNYEN PEFDRNYFEV 780 LAEPGINAFK CQCAKFTRDG IPCCHIFRLF TQFGINEIPE QYIMPRWTKK FREEQLKQNK 840 EKLFDKHGIK DSENTLRYAM LMSKAAEICQ KICHDEAKCS IFMQELDKIQ EKLITESREN 900 AQNDNPCREQ GALQQEHRGS SSNAEQEQQH TGYSTVMLGP KCAVGQ

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MELDNARPPE LGMKFATLED AQRFYETHAL KTGFVAKRGT NYRRKKFTIE CHKTGTSKLT  60
PNPQRKRKKN IIERTQCQAK VVVKLNKGQW EYAAVRNEHN HPLCPSYSLR FSKRKRRRNP  120
PSQKQLDVQR NSDQLTQADN LEERLSQPLI SADSNEVNNK RMPRHAEISI STVEKEPVDK  180
LQRAGDYQEQ SSNGIDKNTE RPIVDKLGDQ TSSIDHSLQH TEEHNRSHDN VESSEAPSED  240
TSSESNSDSS SGDESDKELG KYFYPSFDEL KNSRPPEPGM KFPSLQAAQR FYYAHALLTG  300
FVGKRGTNYK RKKFHLECNK SGKMKLTKSS ENPMKKRRSN LVEKTQCKAR VIVKLDKGEW  360
EFTAVRHEHN HPLCPSPLLA RFIIDHKQMS TGEKSFLRVL QQNRVPPKKI MKIFRKLRVC  420
FGDIPFENKD EHNIAQTEHR KANSDVESAL KHFTELQIQN PEFLYVMQKD EDNTVTSIFW  480
TDARLRIEYD IFGDLIMFDA AYSTDMYNMP FVPIIGINSH ATPFLLGCAL LKDEKVETFE  540
WMLRTFLQVM GGKMPRAVIT NQDTSMEKAF AELMPHVRLR FCKRHVMSKA QEKLGDFMTA  600
RGNINTDLHN LVGNSLVETE FEEGWVELIE RYNASENQHL QLMWQTRKSW APVYFREDLY  660
PFIDSVGSNE GINSLFKGNM LPKDTIDKFI GQFKEIQENI AKVHEEDRFQ SGADLKYISM  720
QPIEQHAAHI YTREIFLKVQ KELLHSTAFN VQEIQIGTVY RLEKVFNYEN PEFDRNYFEV  780
LAEPGINAFK CQCAKFTRDG IPCCHIFRLF TQFGINEIPE QYIMPRWTKK FREEQLKQNK  840
EKLFDKHGIK DSENTLRYAM LMSKAAEICQ KICHDEAKCS IFMQELDKIQ EKLITESREN  900
AQNDNPCREQ GALQQEHRGS SSNAEQEQQH TGYSTVMLGP KCAVGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	68	RKRKK
2	112	117	KRKRRR
3	113	117	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0111800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064078	0.0	AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627510.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	I1NZG2	0.0	I1NZG2_ORYGL; Uncharacterized protein
STRING	ORGLA02G0111800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-80	FAR1-related sequence 5