PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0153200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 174aa    MW: 20594.1 Da    PI: 4.5802
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0153200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.4e-075445189
               FAR1 51 errtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                       e+++ a tr+gC akl++++++ +g+w v++++++H  el
  ORGLA02G0153200.1  5 EKEPWALTRCGCLAKLEIERNEeKGVWFVKEFDNQHMLEL 44
                       5677889**************99*************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-5544IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
EDRVEKEPWA LTRCGCLAKL EIERNEEKGV WFVKEFDNQH MLELANPDHD AFLGVHRVMS  60
DSKKAQAVEL HMSGLRPFQI MEVMENNHDE SEEVGFVMKD LYNFFTRYEM KNIKGRDAEN  120
VLKYLTRKQE EDPEFFFKYT TDEEGRLRNV FWADVESRLD YAAFGGVVIF DSTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0153200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056300.0AP005630.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0021C10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611182.11e-106protein FAR1-RELATED SEQUENCE 5
TrEMBLI1P0M61e-127I1P0M6_ORYGL; Uncharacterized protein
STRINGORGLA02G0153200.11e-127(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1-related sequence 5