PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0159100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 207aa    MW: 21792.9 Da    PI: 9.2913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0159100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-173887255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ ++g
  ORGLA02G0159100.1 38 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 87
                       588******.**********843...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-253796No hitNo description
PfamPF008472.7E-103887IPR001471AP2/ERF domain
SMARTSM003802.2E-3138101IPR001471AP2/ERF domain
PROSITE profilePS5103221.2853895IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-283895IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-213895IPR016177DNA-binding domain
PRINTSPR003679.5E-93950IPR001471AP2/ERF domain
PRINTSPR003679.5E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDFYFFSSSA PAPEKKTRRR QQQQQREQEG GGGGNEARYL GVRRRPWGRY AAEIRDPATK  60
ERHWLGTFDT AEEAAVAYDR AARTIRGAAA RTNFAYPDLP PGSSLTPYLS PDLSADDLHR  120
HYYGAGAGAD TQTAAAAALP APAQPAHGGD AQEMAYGGGG GQNVGGVFDV VVGGGGAAWC  180
DASELDVRRV RRRGRVGGGG GGVLRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-193194771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0159100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879251.11e-82ethylene-responsive transcription factor LEP
TrEMBLI1P0T51e-144I1P0T5_ORYGL; Uncharacterized protein
STRINGORGLA02G0159100.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-23ERF family protein