PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0169200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 804aa    MW: 91908.5 Da    PI: 7.8357
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0169200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.65e-2953142190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+
  ORGLA02G0169200.1  53 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 142
                        6*******************************************999.**********************9999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-2653142IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.75468142IPR003657WRKY domain
PfamPF105513.1E-17267351IPR018289MULE transposase domain
PROSITE profilePS5096610.46538574IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5545571IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-7549576IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
XXLSLLLLRP LPSGNTAVED SEAGPCIPRV QAATGDYTPW LGQEFASEHE AYEFYRYYAW  60
KLGFSVRREY ANKSRKTGEI TSRKFVCSRE GFKAPDKRTN HTRTPQPDTR TGCHANLVIR  120
RKNDTSKYEV YAFEAQHNHP LFIPSCANPL QRKLSDVQSS DADNSGSVTH TSEPESRNSI  180
LAKNTVNSPE ISQRSLHTRR QREIKCGEAS ALLNYLQDQC RADPLFYHAV QLDAEDKVTN  240
IFWADAKMVI DFGQFGDVVS FDIVPRNNMN LRPFASFVGF NNYGETVLLG MALMYDDSLE  300
SFQWLFETFL HAMSGQAPQT VFSRQDAIVA KAISLVMPDT CHAICTWNLK QTAKSNLNHL  360
IRGDCGFIKE FKACINDYEE EVELFTAWEA MISKYNLHSN VWLQKVFEEK EKWARPYTKW  420
IFSAGMKNTQ LNERLHSDFR DYLKSDVDII SFLKHLKKLV NDRRYIELEV EFSSRLKLPD  480
FKIRAPILRQ ASEAYTGMIF QLFQEEYEEF QSAYIVTRDE SGPSREYIVA ILEKERRYKV  540
HGNPSEQTVT CSCRKFETLG FLCSHALKVL DTMDIKYMPD RYILKRWAKY GRCLTAPQVE  600
GRKVQADTTL EFSSRYEYLC PVYVRLVARA SECEESYRVL DQCSVELGKK IEEILQKQTS  660
IDASAPQSDI EDVTISLSAN GTDNESERAL DYSSSTRPKR RKKKGRNAKS QRKSCIEKGL  720
QKTKKVQPEQ SPIQYTMLDA TQPGNVLFQG LDISNPFPMG QLNYGGVQPQ PGLCPSLPTV  780
SRELGFAAYL SQPSSNSQHN QQGL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0169200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667980.0AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627311.10.0protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLI1P1360.0I1P136_ORYGL; Uncharacterized protein
STRINGORGLA02G0169200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-86FAR1-related sequence 5