PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0170800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 215aa    MW: 22269.1 Da    PI: 11.1567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0170800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1993142255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  ORGLA02G0170800.1  93 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAALRFRG 142
                        7********.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1393142IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2393151IPR016177DNA-binding domain
SMARTSM003801.1E-3593156IPR001471AP2/ERF domain
PROSITE profilePS5103226.23993150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3293151IPR001471AP2/ERF domain
PRINTSPR003671.1E-1194105IPR001471AP2/ERF domain
CDDcd000188.23E-14101151No hitNo description
PRINTSPR003671.1E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAALFEAAET AAIVAALTRV IADGGRGGGG GVCVQPPAPS LVVPPRAGTG GGRRVDVARE  60
EEMVGVVSAG DHAGEASVAA AGVVVAAPAT ARRYRGVRRR PWGKWAAEIR DPRKAARVWL  120
GTFRTAEDAA RAYDAAALRF RGRRAKLNFP EEVSRPWQGH DVDHMSCSPS SISNARFLGS  180
WTFGPPPPPS RSVAAAATTL LGGSHGGNGA ENGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2389154167ATERF1
3gcc_A6e-2389154167ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0170800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078520.0AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878870.12e-97ethylene-responsive transcription factor ABR1
TrEMBLI1P1521e-148I1P152_ORYGL; Uncharacterized protein
STRINGORGLA02G0170800.11e-148(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-19related to AP2 6l