PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0170900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 214aa    MW: 22386.1 Da    PI: 11.5489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0170900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-1391140255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+h  +Er RR++i++ f  Lr+l+P++      K +Ka+i+ +A+ +I+sL+
  ORGLA02G0170900.1  91 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 140
                        578999**********************9....68*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-1686152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-1388144No hitNo description
PROSITE profilePS5088814.91989139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1192140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1693153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1195145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA  60
KGKTTATPPA ASSTNAPNNQ GGGGGGGRSR ERMHIFAERE RRRKIKNMFT DLRDLVPSLT  120
NKADKATIVG EAISFIRSLE ETVADLERRK RERDSLAARC ARLGLGGSSS SSAPPPPHPP  180
PPPTTPPPSC RPRRRCRHLM PPRSPRGQSL RRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0170900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.11e-104transcription factor bHLH95
TrEMBLI1P1531e-149I1P153_ORYGL; Uncharacterized protein
STRINGORGLA02G0170900.11e-150(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-17bHLH family protein