PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0175400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 204aa MW: 22816.5 Da PI: 6.7308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0175400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.7e-32	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F P+deel+v++L++kv+ +++ ++i+++ ++++Pw+L+ k+ + ++wyfF++ + +r+ ++g W+ g d++v ORGLA02G0175400.1 7 LPPGFHFFPSDEELIVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGHWSPIGVDETV 89 79***********************999.89**********966667789**9855........577789********** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +g++vglkktL f g+ ++g +t+W+mhey+l ORGLA02G0175400.1 90 RS-GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124 9.99****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-45	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	40.464	7	168	IPR003441	NAC domain
Pfam	PF02365	2.4E-20	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGGATNLPPG FHFFPSDEEL IVHFLRRKVS LLPCHPDIIP TLLPHRYNPW ELNGKALQAG 60 NQWYFFCHLT QSRTSSNGHW SPIGVDETVR SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH 120 EYHLLDGDCV AGGSSNLTSS SSNRRSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG 180 TELSCLDEVF LSLDDYDEVS LPNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-33	6	173	19	173	NAC domain-containing protein 19
3swm_B	6e-33	6	173	19	173	NAC domain-containing protein 19
3swm_C	6e-33	6	173	19	173	NAC domain-containing protein 19
3swm_D	6e-33	6	173	19	173	NAC domain-containing protein 19
3swp_A	6e-33	6	173	19	173	NAC domain-containing protein 19
3swp_B	6e-33	6	173	19	173	NAC domain-containing protein 19
3swp_C	6e-33	6	173	19	173	NAC domain-containing protein 19
3swp_D	6e-33	6	173	19	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0175400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831377	0.0	CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626053.1	1e-150	NAC domain-containing protein 104
Swissprot	Q8GWK6	2e-61	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	I1P198	1e-149	I1P198_ORYGL; Uncharacterized protein
STRING	ORGLA02G0175400.1	1e-150	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-62	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]