PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0178500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 174aa    MW: 19155.4 Da    PI: 6.5037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0178500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000265981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C +C+k+F ++  L  H++ H
  ORGLA02G0178500.1 59 FSCCYCPKRFQSSQALGGHQNAH 81
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.58E-55885No hitNo description
PROSITE profilePS5015710.2015986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
YPDESSEKQP LASLLLPSDH FFIPFVGAPE FMGEQMDNEE LNLSLSLQPS YPSRFQTEFS  60
CCYCPKRFQS SQALGGHQNA HKLQRNLAKR NREAFLSISQ RKGANAGIKD GSSALSAESI  120
CKISSGKKHH KEAWQVMQGS CGSSSSGTVM HKSIEQDVED EDLSNGTIDL SLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0178500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058830.0AP005883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0435E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1P1C91e-125I1P1C9_ORYGL; Uncharacterized protein
STRINGORGLA02G0178500.11e-126(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-14zinc finger protein 2