PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0200100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 217aa    MW: 23007.7 Da    PI: 8.6699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0200100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13153198655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  ORGLA02G0200100.1 153 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 198
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-12151202No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASNGFPGSK GGGGSGAEAH HHHHHPSMAG SGSGSSSGGR KMKSQLSFTA GPPHLSHIAE  60
DGAFPDRAGA EASVPRTFSA GGSSGGGGFS IVGPWEESRD IISTLGGYES QFGGMASTSA  120
LEMAGMDRYL QLQHDQVPFK VRAKRGCATH PRSIAERERR TRISEKLRKL QELVPNMDKQ  180
TSTADMLDLA VEHIKGLQSQ LQALKHEQEK CTCCSRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0200100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-126transcription factor bHLH128 isoform X1
SwissprotQ8H1022e-52BH128_ARATH; Transcription factor bHLH128
TrEMBLB8AF191e-157B8AF19_ORYSI; Uncharacterized protein
TrEMBLI1P1Z51e-157I1P1Z5_ORYGL; Uncharacterized protein
STRINGORGLA02G0200100.11e-158(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]