PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0202200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 271aa    MW: 29175.5 Da    PI: 4.7381
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0202200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.3e-07446541
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        C+ +e+  +   C  ++  lC+ C +e H        H++ p
  ORGLA02G0202200.1  4 QCDACESAAAAVVCCADEAALCAACDVEVHAAnklagkHQRLP 46
                       7*******9*********************6678888888877 PP
2zf-B_box26.99.9e-095485334
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ ++ek + +fC +++ l+C+dC + +H
  ORGLA02G0202200.1 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                       689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
PfamPF006432.6E-5447IPR000315B-box-type zinc finger
SMARTSM003369.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025299IPR000315B-box-type zinc finger
SMARTSM003364.6E-145299IPR000315B-box-type zinc finger
PfamPF006431.8E-65495IPR000315B-box-type zinc finger
CDDcd000212.17E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS PCDGGNDAHD  120
SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAV DELLQFSDYE TGDKLQKESS  180
PPLGFQELEW FADIDLFHNQ APKGGAAAGR TTAEVPELFA SQAANDVAYY RPPTRTAAAA  240
FTAATGFRQS KKARVELPDD EEDYLIVPDL G
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0202200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018850.0AB001885.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1577.
GenBankAK0610440.0AK061044.1 Oryza sativa Japonica Group cDNA clone:006-205-E01, full insert sequence.
GenBankAK1042930.0AK104293.1 Oryza sativa Japonica Group cDNA clone:001-007-G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626533.10.0B-box zinc finger protein 25
TrEMBLI1P2160.0I1P216_ORYGL; Uncharacterized protein
STRINGORGLA02G0202200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.17e-50salt tolerance homologue