PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0203300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 846aa    MW: 96374.1 Da    PI: 6.3421
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0203300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.81.7e-1394175188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        k+Y++YA + GFs  + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +l+HnH+
  ORGLA02G0203300.1  94 KYYKQYAADSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLDHNHP 175
                        69*************9999998.7888***************99998.....999****************99999***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-1194175IPR004330FAR1 DNA binding domain
PfamPF105515.1E-23281374IPR018289MULE transposase domain
PROSITE profilePS509669.446568605IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7577601IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MVEGLPAELP IVDVAARLDG KSSELPENGA LLKGAEESQD LGGNPVAELT LHEGKEVILV  60
DDNDSEQEDG GSGKVDENAP RVGFRFKTYD DALKYYKQYA ADSGFSAIIL KSSYLKSGVC  120
RRLVLGCSRA GRGRANACYL SRESTKINCP ARISLKLRQD RWLHIDDAKL DHNHPPNQSS  180
VSHMNCYKKL TDAKNEETAS RSKGRRNVPI GDKEQGSFTE IGRLKFGEGD DEYIHKFFGS  240
MQNKNPNFFY LVDLDKQGRL RNLFWSDARS QAAHDYYGRD VIYFDTSYLT EKYDLPLVFF  300
TGVNNHGQPV LFGTGLLSDL GVDSYVWLFR AFFVCMKGCY PDAIITEHYN AILDAVRDVL  360
PQVKHRLCLY RIMKDVAENL KAHAEFKTIK KALKKVTYGS LKASEFEADW KKIILEHGLG  420
ENECLSSLYE HRQLWAPAYL KGQFWAGMSV SQRGESIVSY YDGFVYPKTS LKQFFSKYEI  480
ILENKYKKEL QADEESSHRT PLTVTKFYME EQLAKEYTIN MFKKFQDELK ATMYCDGMPT  540
KVDGQFVTFV VKECSYMEDG KEKEGRNYEV YFCKQELVNC ECECGFFQFT GILCRHILSV  600
FKLQEMFEIP IRFVLDRWKR DYKKLHADAL CKNDEMLPDV LPDGIIERHD ILFTQSRQVL  660
NLGFISEGRY LVALKLLRQA EKTLLDDGDR GRQAGLLSFE AEAPENDEGI FSPEFSEGVK  720
NSQSTNAKRR GRPTKKLIES DSDTVLRPNK EQDFLRSSFV TDESNMIQGA PSASHLESPH  780
LGVDLMEGIP PNLSFNHHFG MDVNHQHQVP NQPRMLPSNF LQAQADSQGY GNQWAFPTLQ  840
VCFLGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0203300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1193190.0AK119319.1 Oryza sativa Japonica Group cDNA clone:001-130-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626730.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1P2270.0I1P227_ORYGL; Uncharacterized protein
STRINGORGLA02G0203300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-117FAR1-related sequence 6