PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0203500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 818aa    MW: 92678.9 Da    PI: 9.0096
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0203500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.54e-1754137190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  ORGLA02G0203500.1  54 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 137
                        5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1554138IPR004330FAR1 DNA binding domain
PfamPF105511.7E-30257350IPR018289MULE transposase domain
PfamPF044342.2E-6537576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.371544580IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-5555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MMEAEEAFPP QRNPRRARRR DLNALDPSLE ESDGEDIGVP EVGMVFNNHT EVNRFYRRYA  60
RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD  120
KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG  180
ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGCVRNV  240
FWADARSRSM YEFYNDVVTL DTSYVVGKYD MPLATFIGVN HHGQSVLLGC GLLSDETAET  300
YSWLFKAWIA CMSGNLPKAI ITGHCRGIQS AVAEVIPGVH HRICLFHIMR KATERLGGLS  360
EYAAISKAFQ KAVYDSLTID EFEGNWNALI TYNGLQGNDW LRSIYECRYS WVPVFLKETF  420
WAGMSATQRN ENIIPFFDGY VDLKTTLKHF LGKYEMALQS KYEKEAQADF ETFHKQRPPV  480
SKFYMEEQLS KVYTHNIFKK FQDEIEAIMY CHVSFINVDG LISTFDVKEW IFLEDGKRTM  540
SKIFTVTNNT DKNDLTCICG GFQFNGILCR HSLSVLKFQQ VREIPPHYVL DRWKKDFRQL  600
HVMGRPSSDV VPNNRVDRFD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD  660
DTQPRIKSRI PKANKPNTVV GQNLVNVGTY NGNDRPKATT EASSLTQGLD VQKGGAEKGI  720
VPAGYIGLPA NVQQFVGSQT AIRPSIVYMV PSGVDPQAFG NGVLMPVVYQ QMFQVPQQPN  780
GTMPDTSANG KRKRPRAQKP TEASEQSNGT PATGPTSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0203500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735270.0AK073527.1 Oryza sativa Japonica Group cDNA clone:J033046M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625321.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLI1P2290.0I1P229_ORYGL; Uncharacterized protein
STRINGORGLA02G0203500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-136FAR1-related sequence 6