PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0219000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 231aa    MW: 24334.2 Da    PI: 4.1766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0219000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-101242448
                       HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                       W++Iar+++ gRt++++k++w++yl
  ORGLA02G0219000.1  1 WSRIARHLP-GRTDNEVKNYWNSYL 24
                       *********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.05E-7124No hitNo description
PfamPF002491.9E-7124IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-8131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-11125IPR009057Homeodomain-like
PROSITE profilePS5129418.003128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
WSRIARHLPG RTDNEVKNYW NSYLKKRVES GGGKTSQGPP TTPASAASSP ADSDDSHSLQ  60
QKPHEPANSD SSEPAHESSS ASADSSCLTV TTDHPPVSRP HAAVTPKVMF ADWLDMEYIC  120
GQVAAAPGLD TAGFAVIGGA AGDQQQQQQQ QVMSQDGSVH QADGPSCGVD DSSLQQQQQE  180
GFGGNGGCWD FQEQFDSIDQ MQASGGGGGG GFCDLLSMSD FDLWAELERT A
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0219000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8378400.0CT837840.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622999.11e-122transcription factor MYB21
TrEMBLI1P2I41e-168I1P2I4_ORYGL; Uncharacterized protein
STRINGORGLA02G0219000.11e-169(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-11myb domain protein 19