PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0220100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 256aa MW: 27021.8 Da PI: 8.0253

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0220100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.5	8.4e-67	20	212	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkee.....................llee 74 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ +a + ++ ++ l+e+ ORGLA02G0220100.1 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAnQLHFGPSllsptsphglldevafqtpslLMEQ 111 579******************************************999666654432044555557777899997777777666532332 PP YABBY 75 lkveeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 +++ + + +++++as+ +++++ + +++ e+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknW ORGLA02G0220100.1 112 AASASLSSITGRSSSSCASNA-PAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 202 222222222222233333333.3333478777888899999877678***************************************** PP YABBY 161 ahfPkihfgl 170 ahfP+ihfgl ORGLA02G0220100.1 203 AHFPHIHFGL 212 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-70	21	212	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	150	205	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	161	204	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSSSSSSSAV FPLDHLAAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL 60 LSVNLRGLLL PAPAPAPANQ LHFGPSLLSP TSPHGLLDEV AFQTPSLLME QAASASLSSI 120 TGRSSSSCAS NAPAMQMPPA KPVQQEPELP KNAPASANRP PEKRQRVPSA YNRFIKDEIQ 180 RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDQGFKK TFKPQDGSED ILLKDSLYAA 240 AAAAAAAAAN MGVTPF

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0220100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	0.0	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	0.0	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622736.1	0.0	protein YABBY 4
Swissprot	A2X7Q3	0.0	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	0.0	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A0D3F851	0.0	A0A0D3F851_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YVL2	0.0	A0A0D9YVL2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CP17	0.0	A0A0E0CP17_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GAC6	0.0	A0A0E0GAC6_ORYNI; Uncharacterized protein
TrEMBL	I1P2J5	0.0	I1P2J5_ORYGL; Uncharacterized protein
STRING	OGLUM02G26190.1	0.0	(Oryza glumipatula)
STRING	OMERI02G24350.1	0.0	(Oryza meridionalis)
STRING	OS02T0643200-01	0.0	(Oryza sativa)
STRING	ONIVA02G28110.1	0.0	(Oryza nivara)
STRING	ORGLA02G0220100.1	0.0	(Oryza glaberrima)
STRING	OBART02G25670.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-61	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]