PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0222200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 629aa    MW: 67795.1 Da    PI: 4.6031
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0222200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.54.3e-2988172187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s  +++f+qlea
  ORGLA02G0222200.1  88 RWPREETLALIRIRSEMDVAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 172
                        8*********************************************************************866665..*******85 PP
2trihelix1086.4e-34396481187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k+ev+aLi++r e+ee++++   k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  ORGLA02G0222200.1 396 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 481
                        8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1185147IPR001005SANT/Myb domain
CDDcd122033.36E-2787152No hitNo description
PfamPF138378.6E-2187173No hitNo description
PROSITE profilePS500907.08587145IPR017877Myb-like domain
SMARTSM007171.0E-5393455IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-5395452IPR009057Homeodomain-like
PROSITE profilePS500907.851395453IPR017877Myb-like domain
CDDcd122034.26E-27395460No hitNo description
SuperFamilySSF466898.54E-5395463IPR009057Homeodomain-like
PfamPF138372.5E-22396482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MQHPQGAGDP PYGVVPAPPT MAAAFDLPPV TTPAPAAPSD VLLPTQPQVS GPEEFPAAAV  60
NSNDDDMMMV DDVVVAGGVG GSGSTGNRWP REETLALIRI RSEMDVAFRN ATLKAPVWEE  120
LSRRLAELGY QRSGKKCKEK FENVDKYYKR TKEGRTGRQD GKSYRFFSQL EALHAAAPPP  180
PPQQRQGMPV EDPQPLAMAR MMLPGAADLG FLSMSSESES DDESDEEEEE EEEAVAPGGG  240
GREGLGDDGD GDGEGGSSTR KLMAMFEGMM RQVTEKQDAM QRVFLETLEK WEAERTEREE  300
AWRRKEVARI NREREQLSKE RAAAASRDAA LIAFLQRVGG AGGEPVRLSP SSAGATRHDA  360
AAAGLQLVPV PAPRAKAEDA WAAAGGDGSG TTAPSRWPKE EVQALIDLRM EKEEQYNDMG  420
PKGPLWEEIA AGMQRIGYNR SAKRCKEKWE NINKYFKKVK ESNKRRPEDS KTCPYFHQLD  480
AIYRKKHFAG RGGGGGGVTI AASHSSLAIV TVSEQDNPSQ RELEGKSSND VGNVQLAVPL  540
LVHNAPDKKV EGSEGEPNVT AAAEETDSDE MGGEYTDDGD DDDKMQYKIE FQKPTAGGGG  600
DGNDAAVPAT TAAATSSAPT SNTSFLAVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0222200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117420.0AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622654.10.0trihelix transcription factor GTL1 isoform X2
RefseqXP_025878530.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_025878531.10.0trihelix transcription factor GTL1 isoform X2
SwissprotQ391172e-68TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLI1P2L60.0I1P2L6_ORYGL; Uncharacterized protein
STRINGORGLA02G0222200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-46Trihelix family protein