PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0224400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 188aa MW: 20378.4 Da PI: 8.492

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0224400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.3	2.3e-11	162	186	1	27
---SS-EEEEEEE--TT-SS-EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrC 27 ldDgy+WrKYGqK+vk+s +pr Y C ORGLA02G0224400.1 162 LDDGYKWRKYGQKVVKNSLHPR--YIC 186 59*******************9..555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-13	147	186	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-10	154	186	IPR003657	WRKY domain
PROSITE profile	PS50811	13.035	157	188	IPR003657	WRKY domain
SMART	SM00774	6.4E-4	162	188	IPR003657	WRKY domain
Pfam	PF03106	1.6E-7	163	184	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MHTCMEGGGQ LGTCLPNFYL LPDHHGMPLP PPLQLPCHPK LLQMPFDQED QPGIHGVMLS 60 SDHCGLYPLP ALPLSNSAAA AATVALGKHS AAAGSMPNIG GAEEVATSVT KAGNESTTCN 120 GSTTWWRGST MVAAGEKGKM KIRRKMREPR FCFQTRSEVD VLDDGYKWRK YGQKVVKNSL 180 HPRYICST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0224400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072906	0.0	AK072906.1 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624962.1	1e-120	probable WRKY transcription factor 12
Swissprot	Q93WY4	1e-27	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	I1P2N8	1e-139	I1P2N8_ORYGL; Uncharacterized protein
STRING	ORGLA02G0224400.1	1e-140	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	3e-29	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]