PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA02G0248500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 512aa MW: 52209 Da PI: 6.1521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA02G0248500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.8e-31	242	300	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ ORGLA02G0248500.1 242 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.4E-31	236	302	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	236	302	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-26	239	302	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	241	301	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	243	300	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MCDYFLQRME GEQAAGDLAD IVLRAGGAAA AAAAVAGGGI PSTEWQLPPA EEEEEEPGLF 60 PLPPSSSDGS GMSGADAFGD PFAGLPDPFG GDYPSSSGGA AAAADFFDAV VAKAGFVDVG 120 VLGGGGGGGC DGGGVDGGGG GSSLLGMSKP ILPRAAMQLP SVSPRAIRPY PVMAGDTVKL 180 GAPMAGGPCA FDGAAAAGLH MSSSPRGAVG GIKRRKNQAR KVVCIPAPAA AGGRTSGEVV 240 PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP 300 WPTQRNALAG STRSHHAKNS SSNSSSSGAS SASKNNSSHS GYHHHHHQKP LVKAEPNDQS 360 AAAAAATTAA TVPVKEEAAM VGTSSEALAK TTQKSMEDAA AAASATAAAV EHSDLMQQMF 420 SQSYRPMIPE AAAGGHHDDF FADLAELESD PMSLIFSKEY MATNYKPAGD PAGKEMNAVD 480 KGLDPAYMLD WSSTTVVTRA GGSSFMQGEG GL

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MCDYFLQRME GEQAAGDLAD IVLRAGGAAA AAAAVAGGGI PSTEWQLPPA EEEEEEPGLF  60
PLPPSSSDGS GMSGADAFGD PFAGLPDPFG GDYPSSSGGA AAAADFFDAV VAKAGFVDVG  120
VLGGGGGGGC DGGGVDGGGG GSSLLGMSKP ILPRAAMQLP SVSPRAIRPY PVMAGDTVKL  180
GAPMAGGPCA FDGAAAAGLH MSSSPRGAVG GIKRRKNQAR KVVCIPAPAA AGGRTSGEVV  240
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  300
WPTQRNALAG STRSHHAKNS SSNSSSSGAS SASKNNSSHS GYHHHHHQKP LVKAEPNDQS  360
AAAAAATTAA TVPVKEEAAM VGTSSEALAK TTQKSMEDAA AAASATAAAV EHSDLMQQMF  420
SQSYRPMIPE AAAGGHHDDF FADLAELESD PMSLIFSKEY MATNYKPAGD PAGKEMNAVD  480
KGLDPAYMLD WSSTTVVTRA GGSSFMQGEG GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-25	216	303	2	80	Disease resistance protein RRS1
5w3x_D	3e-25	216	303	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA02G0248500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073100	0.0	AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624748.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	2e-69	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	I1P3C9	0.0	I1P3C9_ORYGL; Uncharacterized protein
STRING	ORGLA02G0248500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-66	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]