PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0255200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 125aa    MW: 13773.4 Da    PI: 6.4832
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0255200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.36.9e-167614599
             DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                        l++l  +++ +a+sslvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la++  
  ORGLA02G0255200.1  7 SLQELLAQQQGNAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAXG 61
                       6899999*******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.636163IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-13759IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLARCSSLQE LLAQQQGNAV SSLVYEANDR MRDPVYGCVG AISFMQNQVS QLQMQLAVAX  60
GEILCIQMQH RDGNENEKNL RDLGCTFSAS CGPSRSVAGQ AERFGGLQFI MGRNHFWASI  120
WPIGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0255200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041659e-97AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12.
GenBankAP0149589e-97AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126109e-97CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624534.13e-43LOB domain-containing protein 12
SwissprotQ8LBW31e-26LBD12_ARATH; LOB domain-containing protein 12
TrEMBLI1P3J64e-86I1P3J6_ORYGL; Uncharacterized protein
STRINGORGLA02G0255200.16e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-29LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]