PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0280000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 367aa    MW: 40083.2 Da    PI: 6.5312
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0280000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14181240155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s ++GV++++++g+++A+++d  +   g  ++ ++++lg+++t+e+Aa+ ++ a++k++g
  ORGLA02G0280000.1 181 SSFHGVTRHRWSGKYEAHLWDsSCRmEGrrRKgRQVYLGSYDTEEKAARSYDVAALKYWG 240
                        5799*****************777796676336*************************98 PP
2AP249.31.2e-15283334155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  ORGLA02G0280000.1 283 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 334
                        57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.93E-19181250No hitNo description
SuperFamilySSF541713.47E-16181250IPR016177DNA-binding domain
PROSITE profilePS5103218.834182248IPR001471AP2/ERF domain
PfamPF008471.5E-11182240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-16182249IPR001471AP2/ERF domain
SMARTSM003804.5E-26182254IPR001471AP2/ERF domain
PRINTSPR003671.4E-5183194IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17283344IPR016177DNA-binding domain
CDDcd000189.77E-23283342No hitNo description
PfamPF008471.7E-9283334IPR001471AP2/ERF domain
PROSITE profilePS5103218.571284342IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-19284343IPR001471AP2/ERF domain
SMARTSM003808.5E-28284348IPR001471AP2/ERF domain
PRINTSPR003671.4E-5324344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MESSLKEEKA AGESGDDEKA ERSSPINLNS LPATAACAAA APDEDGLHSA VESGAKDSNT  60
TKGVESLGTG HKKIPKREVV DEVDVQTCAE GKNDSVVPSS SKNPINDKNA KANVAENGQS  120
ADGIPEDQRV TILSVVKKDE PADDVRDSVN PVTVVGYRDE KGGTSGTAGT TAVRPAGTRS  180
SSFHGVTRHR WSGKYEAHLW DSSCRMEGRR RKGRQVYLGS YDTEEKAARS YDVAALKYWG  240
QNTKLNFSVS EYERELEDIR DMSREECVTY LRRRSSCFSR GASIYRGVTR RQKDGRWQAR  300
IGLVAGTRDI YLGTFKTEEE AAEAYDIAAI EIRGKNAVTN FDRSNYVEKG MHCIEGAGLK  360
LLASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214GRRRKGRQ
2271292RRRSSCFSRGASIYRGVTRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0280000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851140.0AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds.
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLI1P4940.0I1P494_ORYGL; Uncharacterized protein
STRINGORGLA02G0280000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-73AINTEGUMENTA-like 5