PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0280100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 211aa    MW: 23049.3 Da    PI: 11.8415
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0280100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP30.41.3e-09341051788
                TCP  17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                         R RR    a   + f+d+qd+LG+ ++sk ieWL+ +a  a   l   +  +a +   ++s + s+++ + +
  ORGLA02G0280100.1  34 VRARRTS-TARWYIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLHPPQRRPAPHPrRPSSGRPSEEQARTR 105
                        5666643.4667789**********************999998888888666663332222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136912.0661978IPR017887Transcription factor TCP subgroup
PfamPF036347.0E-63371IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEVVVGKER KRPRCALVGV GGHGSDVADE PGGVRARRTS TARWYIAFYD IQDRLGVNRP  60
SKSIEWLICA ALVARLLLHP PQRRPAPHPR RPSSGRPSEE QARTRKATVV ASPGKLGEKR  120
RKTRSGCAAR KAERIAKLRV WREGWMPRRE ASTSAASGGQ SWIRKPSTPG SGDSCSCSDA  180
KPAKRRWAEK GGEVVAREAG GAERGGGGRR R
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0280100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1P4951e-145I1P495_ORYGL; Uncharacterized protein
STRINGORGLA02G0280100.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1996588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-08TCP family protein