PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0298600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 591aa    MW: 65904.6 Da    PI: 5.0949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0298600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07505552347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
  ORGLA02G0298600.1 505 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 552
                        7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-12498556IPR009057Homeodomain-like
PROSITE profilePS5129413.899498557IPR017930Myb domain
SMARTSM007179.5E-7502555IPR001005SANT/Myb domain
CDDcd116602.45E-17504554No hitNo description
SuperFamilySSF466894.45E-14504557IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEVGGPQDAL DNRSDDNDFD KNDNSDPVVY QLVRVEGDGT LIPATEDEVL QFETFLHDEK  60
VDDDLPSIND VTHVEEYFTN DCIVKKPEFE EGPSKLDTAD VQTQKLDAGL EEDRLCTLND  120
SIVLPSNCSA VHDQQLDKLN TEQGANIIAQ QDNASTETTK STVLNDLSSD KEKADACSKP  180
VNEASAGQSV SGVTSSVPDF SILKGEVCLD DLTMRELQEA FRATFGRQTT VKDKLWLKRR  240
IAMGLINSCD VPSSGCVVRD YKVIAMGAKQ EIPVVEAIPK MELEANLVRD QVMNPGHERD  300
LPSSLSYHSE EQQRSSKRLK RVPTDNDEPQ VTIFAEQGTT KRIRKPTKRY IEELSDIDTH  360
ESTGRLSSPG KRHVYDEVLL RPQIAPLHEV DSLSTAYPTR EDTLGGCSVH VPYVSRMRRG  420
RPRSNFIPFL DPEPSVECTE APAADVVNLE KEGERKNHQK NTGKKGVHVE TSGEKDVQGL  480
QDKDFCDSDD NPKTKRGGKR KHHRAWTLCE VVKLVDGVAR YGAGKWSEIR RLAFSSYSYR  540
TSVDLKDKWR NLIRASQTQL STENDGVCPR KSNPSAIPIP VSILLRVKKT G
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0298600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankAK1024190.0AK102419.1 Oryza sativa Japonica Group cDNA clone:J033093D07, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625819.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625820.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625822.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625823.10.0uncharacterized protein LOC4330901 isoform X1
RefseqXP_015625824.10.0uncharacterized protein LOC4330901 isoform X1
TrEMBLI1P4T00.0I1P4T0_ORYGL; Uncharacterized protein
STRINGORGLA02G0298600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-76TRF-like 6