PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0301600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 202aa    MW: 21551.2 Da    PI: 6.6755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0301600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-171768156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ykGVr++k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa   l+g+
  ORGLA02G0301600.1 17 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 68
                       59*****998.**********933...5********************98888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.09E-241780No hitNo description
SMARTSM003801.1E-281884IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-181880IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-271880IPR001471AP2/ERF domain
PROSITE profilePS5103221.7991878IPR001471AP2/ERF domain
PfamPF008471.1E-101866IPR001471AP2/ERF domain
PRINTSPR003676.2E-91930IPR001471AP2/ERF domain
PRINTSPR003676.2E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMSSSSPVAA SPPEMEKKYK GVRRRKWGKW VSEIRLPNSR DRIWLGSYDS PEKAARAFDA  60
AFVTLRGHGA AGADLNFPDS PPSCDARSSD PRQVQAAALS HANRAHVTPQ QAAAALMSPP  120
SLSPPPGFAT GSEVVAPAVR ADGSIDWRPV MAHPPPLYSP PGWGGGHAYD FLQPPPPSPP  180
LPSCDDDMVD VVDESSASLW SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0301600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042570.0AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624935.11e-142ethylene-responsive transcription factor ERF018
TrEMBLI1P4W01e-141I1P4W0_ORYGL; Uncharacterized protein
STRINGORGLA02G0301600.11e-142(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-32ERF family protein