PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0317800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 418aa    MW: 43858.4 Da    PI: 5.628
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0317800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18335368134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  ORGLA02G0317800.1 335 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 368
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-14328391No hitNo description
SMARTSM004011.6E-15329379IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.082329365IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14333366IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-14334391No hitNo description
PROSITE patternPS003440335360IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15335368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAGVGFVEDM LREQSLLEAT CGDLFDHIDD LLDFPKEESA ADVLLLDAPA PGSPLSSRII  60
GGHANMAAAP PPPPQMMALP PPPAPAKDDA SALFDAAGAL GAEVFDRKDA HIGPCDELDM  120
DMAQLEWLSG LFDDGTIPHE PSFPGVNCAA PIKASALTAN AGVVLPDKAE EALFRSSSPI  180
SVLEHSGFNV ATNGGSSSSS SSSASSSSES FSGSGRAWSA PVSPRPEPPV LVIPARARSK  240
RSRPSAFPAV RGAPAATETT ILVPTPMYSS TSSHSDPESI AESNPHPPPM KKKKKAKKPA  300
APAAASDAEA EADAADADYE EGGALALPPG TVRRCTHCQI EKTPQWRAGP LGPKTLCNAC  360
GVRYKSGRLF PEYRPAASPT FMPSIHSNSH KKVVEMRQKA TRTADPSCDL LQYIRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA02G0317800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8289650.0CT828965.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA219J10, full insert sequence.
GenBankCT8289660.0CT828966.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA222D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626107.10.0GATA transcription factor 11
RefseqXP_015626108.10.0GATA transcription factor 11
TrEMBLI1P5C20.0I1P5C2_ORYGL; Uncharacterized protein
STRINGORGLA02G0317800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-36GATA family protein