PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0032900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 217aa    MW: 23211 Da    PI: 9.02
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0032900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19122155134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C + +Tp+WR gpdg++tLCnaCG+++++ +
  ORGLA03G0032900.1 122 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGR 155
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517116152IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15116166IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-15118180No hitNo description
Gene3DG3DSA:3.30.50.105.2E-14120153IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.45E-16122170No hitNo description
PROSITE patternPS003440122147IPR000679Zinc finger, GATA-type
PfamPF003201.5E-17122155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVGDKDAAAL AGELTGDAGA SLNGFFDHTG LEAAVVGEGQ GEGEEEEELE WLSNKDAFPS  60
VDTMAAEVES AAPGAPARAA VGPRTKGLRR RRRVTAPWSL APLLSRPRQA AAADAGAPRR  120
RCTHCAVDET PQWRLGPDGP RTLCNACGVR FKSGRLFPEY RPANSPTFSP LLHSNSHRRV  180
MEMRLQSEED ASAASRVNAK ARRAERAAAR LAGKDKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0032900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427350.0AK242735.1 Oryza sativa Japonica Group cDNA, clone: J090048J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629220.11e-104GATA transcription factor 3
SwissprotQ8L4M67e-37GATA3_ARATH; GATA transcription factor 3
TrEMBLI1P7I31e-153I1P7I3_ORYGL; Uncharacterized protein
STRINGORGLA03G0032900.11e-154(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-34GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]