PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0046500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 601aa    MW: 63479.1 Da    PI: 6.6401
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0046500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083533901954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  ORGLA03G0046500.1 353 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 390
                        554459******************************88 PP
2BELL111.93.6e-36214284171
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                        erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q
  ORGLA03G0046500.1 214 ERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAARPYTALALQTISRHFRSLRDAIGAQ 284
                        799*****************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-49141283IPR006563POX domain
PfamPF075264.3E-48146281IPR006563POX domain
PROSITE profilePS5007112.001331394IPR001356Homeobox domain
CDDcd000863.39E-12334395No hitNo description
SMARTSM003891.7E-9334398IPR001356Homeobox domain
SuperFamilySSF466894.71E-17335401IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27337400IPR009057Homeodomain-like
PfamPF059204.7E-17351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MATFFSSSTN QRDLTGGGGG DGGDMSFQHY PPPSNPYSDS SAGGLIPLPA SIVSHSHIAH  60
GGGDEPAAFR EAATADGGEM GLQTQLLMAH GAAARGHQGG LSLSLGTQVP VSLYQYRPAG  120
MAAASLLSPS QSSPMAGRSA QNSIYVQNSR FLRAARELLD EVVNVRDAIK RKGDKNQGKD  180
SGECKGGDAA GDDKAGSNPQ EQESNSAPEL SPSERQDLQN KVTALMAMLD QVDRRYRHYH  240
HQMQIVMSSF DAVAGGGAAR PYTALALQTI SRHFRSLRDA IGAQAQAARR GLGEQDASAQ  300
GGGGLSRLRY IDQQLRQQRA MQQFGMMQQP QHAWRPQRGL PESAVSVLRA WLFEHFLHPY  360
PKDSEKLMLA RQTGLSRGQV SNWFINARVR LWKPMIEEMY KEEFGAEMDS NSSSENGGGG  420
GGKGKDEAIS SEDRDEFQSP SSAAAARHAG VAGQLNNPFK SEAMGGAALD VGVGVVGLSS  480
CLGGAMGTYA TGLNLNHHVH HPGAGGTSLL HDALHHHHHG GGGDARFVSY GDMADLGGGG  540
GYDGGSVSLT LGLQHCNNAG PVPAEQQGLL YGSAGDFDYI NGSDDRQRFG PASQLLHDFV  600
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-17340398563Homeobox protein Meis2
4xrm_B2e-17340398563Homeobox protein Meis2
5bng_A1e-17340398159Homeobox protein Meis2
5bng_B1e-17340398159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0046500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630993.10.0BEL1-like homeodomain protein 7
RefseqXP_025879612.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-112BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLI1P7W90.0I1P7W9_ORYGL; Uncharacterized protein
STRINGORGLA03G0046500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.12e-90BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]