PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0053700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 547aa    MW: 58186.6 Da    PI: 7.6081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0053700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11253309155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  ORGLA03G0053700.1 253 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 309
                        789******************333.44555535555.779999**************98 PP
2AP246.31e-14354403355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ORGLA03G0053700.1 354 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                        9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14253319IPR016177DNA-binding domain
CDDcd000187.89E-17253319No hitNo description
SMARTSM003802.0E-22254323IPR001471AP2/ERF domain
PROSITE profilePS5103216.871254317IPR001471AP2/ERF domain
PfamPF008471.1E-8254309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-12254318IPR001471AP2/ERF domain
PRINTSPR003679.5E-6255266IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18352413IPR016177DNA-binding domain
CDDcd000183.29E-23352413No hitNo description
SMARTSM003802.9E-33353417IPR001471AP2/ERF domain
PROSITE profilePS5103219.203353411IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18353411IPR001471AP2/ERF domain
PfamPF008471.5E-9354403IPR001471AP2/ERF domain
PRINTSPR003679.5E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDMNNGWLGF SLSSSSARGY GDGCGEGNGG GDGDGSCSSP VAASPLVAMP LHSDGSVHYD  60
APDWRHAEAK DPKLEDFMSV SYSNKSSSNL YGGSSSSSSC GHADQIKYHH VHDVQAFSTP  120
YFYGHGGSGV GIDINMNAPP AGCTGVLPDH RPPPPQQDHI FLPPHGQYFL GPPNPMAPAP  180
MYNAGGGGGG VVDGSMSISG IKSWLRQAMY VPERSAAALS LSVPAVPPSE APLPPAAMPV  240
VRKPAQTFGQ RTSQFRGVTR HRWTGRYEAH LWDNTCRKEG QTRKGRQGGY DKEEKAARAY  300
DLAALKYWGP TTHINFPLST YEKELEEMKH MTRQEFIAHL RRNSSGFSRG ASMYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DISKYDVKRI  420
CSSTHLIGGD LACRRSPTRM LPPDAPAGAA GVDVVVAPGD HQQISAGGGG ASDNSDTASD  480
GHRGAHLLHG LQYAHAMKFE AGESSGGGGG DGATTNWMAA AAAAARPVAG IPTTVHHQLP  540
VFALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0053700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904840.0AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629390.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ1PFE11e-118AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLI1P8410.0I1P841_ORYGL; Uncharacterized protein
STRINGORGLA03G0053700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]