PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0090000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 430aa MW: 49627 Da PI: 7.713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0090000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	88	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+e+GFs+r+s+ ++ +++ i++rtf+Cs+eg+r +k++ ++ +r+etr++C+a++k++ dg ++v++++ eH+H l ORGLA03G0090000.1 88 EFYNAYASEIGFSIRRSSYHYMGNTKIIKNRTFCCSREGTRGVDKRRealVYGNSFNRPETRCKCQACIKISFI-DGFYQVYHFVPEHSHIL 178 6**************************************999888666677888**************.*************99 PP FAR1 90 a 90 a ORGLA03G0090000.1 179 A 179 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-17	88	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MPNNSMIPPS EASQLHDAGA SPMFLDNTFA ATTSFTNLVE PDDSSAGLGM KQIETDQGAN 60 EDSHTRKASE KMTPKVGMKF NSEQEAYEFY NAYASEIGFS IRRSSYHYMG NTKIIKNRTF 120 CCSREGTRGV DKRREALVYG NSFNRPETRC KCQACIKISF IDGFYQVYHF VPEHSHILAT 180 KSQAHQLRSQ RKVNEAQVAS VEVAKSVGIS TKAAVDMLAK QSCGYENLGF TRVDMKNKLY 240 SKRSLLTKQE EEEEFIKAWH QLHDKYELQQ NKWLQRIFDK RHQWALVYGR NTFSADMSTT 300 QRNESFKNEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR 360 DVVEVYTPAI YKIFEEEVMQ TLNCDIFYCG DVDEQKVHKI KSHEDIEKCL KIRCNPDLET 420 SSSPQGVKEN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MPNNSMIPPS EASQLHDAGA SPMFLDNTFA ATTSFTNLVE PDDSSAGLGM KQIETDQGAN  60
EDSHTRKASE KMTPKVGMKF NSEQEAYEFY NAYASEIGFS IRRSSYHYMG NTKIIKNRTF  120
CCSREGTRGV DKRREALVYG NSFNRPETRC KCQACIKISF IDGFYQVYHF VPEHSHILAT  180
KSQAHQLRSQ RKVNEAQVAS VEVAKSVGIS TKAAVDMLAK QSCGYENLGF TRVDMKNKLY  240
SKRSLLTKQE EEEEFIKAWH QLHDKYELQQ NKWLQRIFDK RHQWALVYGR NTFSADMSTT  300
QRNESFKNEL KGYISVKYDM LTFFEHFDRL LGDKRYEEVK CDFRATQSTP RPKAELRILR  360
DVVEVYTPAI YKIFEEEVMQ TLNCDIFYCG DVDEQKVHKI KSHEDIEKCL KIRCNPDLET  420
SSSPQGVKEN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0090000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004381	0.0	AP004381.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0025F03.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1P954	0.0	I1P954_ORYGL; Uncharacterized protein
STRING	ORGLA03G0090000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-23	FAR1-related sequence 5